Fachpublikationen 2007
Algorri, Maria-Elena; Zimmermann, Marc; Friedrich, Christoph M.; Akle, Santiago; Hofmann-Apitius, Martin:
Reconstruction of Chemical Molecules from Images.
In: Engineering in Medicine and Biology Society u.a.:
29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society : EMBC 2007, 22 - 26 Aug. 2007, Lyon, France ; in conjunction with the biennial conference of the Société Française de Génie Biologique et Médical (SFGBM).
Piscataway, NJ : IEEE Service Center, 2007, S. 4609-4612
http://dx.doi.org/10.1109/IEMBS.2007.4353366
Arbona, A.; Benkner, S.; Engelbrecht, G.; Fingberg, J.; Hoffmann, M.; Kumpf, Kai; Lonsdale, G.; Woehrer, A.:
A service-oriented grid infrastructure for biomedical data and com-pute services.
In: IEEE transactions on nanobioscience 6 (2007), 2, S. 136-141
http.//dx.org/10.1109/TNB.2007.897438
Barz, Christoph; Eickermann, Thomas; Pilz, Markus; Wäldrich, Oliver; Westphal, Lidia; Ziegler, Wolfgang:
Co-Allocating Compute and Network Resources - Bandwidth on Demand in the VIOLA Testbed.
In: Priol, Thierry (Hrsg.) u.a.:
Towards next generation grids : proceedings of the CoreGrid Symposium 2007, August 27-28, 2007, Rennes, France.
New York, NY [u.a.] : Springer, 2007, S. 193-202
Baturin, J.M.; Goebel, M.; Klimenko, S.V.; Leonov, A.V.; Nikitin, Igor N.; Nikitina, L.D.; Serebrov, A.A.; Urazmetov, V.F.:
Virtual Storytelling as Innovative Educational Technology.
In: Moscow Institute for Physics and Technology / Chair of System Integration and Management:
Annals of SIM.
Moscow : ICPT, 2007
Clees, Tanja; Ganzer, Leonhard:
An efficient algebraic multi-grid solver strategy for adaptive implicit methods in oil reservoir simulation.
In: Society of Petroleum Engineers <United States>:
SPE Reservoir Simulation Symposium 2007 : February 26 -28, 2007, Houston, Texas, USA.
SPE, 2007
Drotz, Alain; Gruber, Ralf; Keller, Vincent; Thiémard, Michela; Tolou, Ali; Tran, Trach-Minh; Cristiano, Kevin; Kuonen, Pierre; Wieder, Philipp; Wäldrich, Oliver; Ziegler, Wolfgang; Manneback, Pierre; Schwiegelshohn, Uwe; Yahyapour, Ramin; Kunszt, Peter; Maffioletti, Sergio; Sawley, Marie-Christine; Witzig, Christoph; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Application-oriented scheduling for HPC Grids.
CoreGrid, 2007
(CoreGrid technical report; TR-0070)
Volltext
Eickermann, Thomas; Frings, Wolfgang; Wäldrich, Oliver; Wieder, Philipp; Ziegler, Wolfgang; Institute on Resource Management and Scheduling; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies:
Co-allocation of MPI Jobs with the VIOLA Grid MetaScheduling Framework.
2007
(CoreGrid technical report; TR-0081)
Volltext
Eickermann, Thomas; Frings, Wolfgang; Wäldrich, Oliver; Wieder, Philipp; Ziegler, Wolfgang:
Co-allocation of MPI Jobs with the VIOLA Grid MetaScheduling Framework.
In: German e-Science Conference 2007 : GES 2007, 2. - 4. Mai 2007, Baden-Baden.
2007, 10 S.
Volltext
Ettrich Norman; Eulitz, Katja; Müller, Mike; Peetz, Jörg-Volker; Sommer, Thomas; Steckel, Barbara:
3-Code Coupling in Flood Simulation.
In: Wolf, Klaus Dieter (Hrsg.); Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI <Sankt Augustin>:
8TH MpCCI User Forum 2007 : February 13 and 14, 2007, Sankt Augustin ; proceedings.
Sankt Augustin : Fraunhofer SCAI, 2007, S. 108-117
Faroughi, Arash; Faroughi, Roozbeh; Wieder, Philipp; Ziegler, Wolfgang; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies:
Attributes and VOs: Extending the UNICORE authorisation capabilities.
2007
(CoreGrid technical report; TR-0097)
Volltext
Figuerola, S.; Ciulli, N.; Leenheer, M. de; Demchenko, Y.; Ziegler, Wolfgang; Binczewski, A.:
PHOSPHORUS: Single-step on-demand services.
In: Wang, Jianli (Hrsg.) u.a.; Society of Photo-optical Instrumentation Engineers:
Network Architectures, Management, and Applications V : SPIE Asia-Pacific Optical Communications (APOC), Wuhan, China, Nov. 1-5, 2007 ; proceedings.
Bellingham, Wash. : SPIE, 2007, 16 S.
(Proceedings of SPIE 6784).
Volltext
Fluck, Juliane; Mevissen, T.H.; Dach, H.; Oster, M.; Hofmann-Apitius, Martin:
ProMiner: Recognition of Human Gene and Protein Names Using Regularly Updated Dictionaries.
In: Hirschmann, Lynette (Hrsg.) u.a.:
Proceedings of the Second BioCreative Challenge Evaluation Workshop : April 23-25 2007, Madrid, Spain.
Madrid, 2007, S. 149-151
Gietz, Peter; Grimm, Christian; Groeper, Ralf; Haase, Martin; Makedanz, Siegfried; Pfeiffenberger, Hans; Schiffers, Michael; Ziegler, Wolfgang:
Trust Issues in Shibboleth-Enabled Federated Grid Authentication and Authorization Infrastructures Supporting Multiple Grid Middlewares.
In: e-Science 2007 : 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, December 10th - 13th 2007.
New York, NY : IEEE, 2007
Grimme, Christian; Lepping, Joachim; Papaspyrou, Alexander; Wieder, Philipp; Yahyapour, Ramin; Oleksiak, Ariel; Wäldrich, Oliver; Ziegler, Wolfgang; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Towards a standards-based Grid Scheduling Architecture.
CoreGrid, 2007
(CoreGrid technical report; TR-0123)
Volltext
Gruber, Ralf; Keller, Vincent; Thiémard, Michela; Wäldrich, Oliver; Wieder, Philipp; Ziegler, Wolfgang; Manneback, Pierre:
Integration of Grid Cost Model into ISS/VIOLA Meta-scheduler Environment.
In: Lehner, Wolfgang (Hrsg.) u.a.:
Euro-Par 2006 workshops: parallel processing : CoreGRID 2006, UNICORE Summit 2006, petascale computational biology and bioinformatics, Dresden, Germany, August 29 - September 1, 2006.
Berlin [u.a.] : Springer, 2007, S. 215-224
(Lecture notes in computer science 4375).
http.//dx.doi.org/10.1007/978-3-540-72337-0%5F21
Volltext
Harmandaris, Vagelis A.; Reith, Dirk; Vegt, Nico F. A. van der; Kremer, Kurt:
Comparison between coarse-graining models for polymer systems : two mapping schemes for polystyrene.
In: Macromolecular chemistry and physics 208 (2007), 19-20, S. 2109-2120
http://dx.doi.org/10.1002/macp.200700245
Hülsmann, Marco; Friedrich, Christoph M.:
Comparison of a novel combined ECOC strategy with different multiclass algorithms together with parameter optimization methods.
In: Perner, Petra (Hrsg.):
Machine learning and data mining in pattern recognition : 5th international conference, MLDM 2007, Leipzig, Germany, July 18-20, 2007 ; proceedings.
Berlin [u.a.] : Springer, 2007, S. 17-31
(Lecture notes in computer science 4571 : Lecture notes in artificial intelligence).
Volltext
http://dx.doi.org/10.1007/978-3-540-73499-4%5F3
Volltext
Jacq, Nicolas; Breton, Vincent; Chen, Hsin-Yen; Ho, Li-Yung; Hofmann, Martin; Lee, Hurng-Chun; Legré, Yannick; Lin, Simon C.; Maaß, Astrid; Medernach, Emmannuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Sridhar, Mahendrakar; Kasam, Vinod; Wu, Ying-Ta; Zimmermann, Marc:
Grid-Enabled High Throughput Virtual Screening.
In: Dubitzky, Werner (Hrsg.) u.a.:
Distributed, high-performance and Grid computing in computational biology : international workshop, GCCB 2006, Eilat, Israel, January 2007.
Berlin [u.a.] : Springer, 2007, S. 45-59
(Lecture notes in computer science 4360 : Lecture notes in bioinformatics).
http://dx.doi.org/10.1007/978-3-540-69968-2%5F5
Volltext
Jacq, Nicolas; Breton, Vincent; Chen, Hsin-Yen; Ho, Li-Yung; Hofmann, Martin; Kasam, Vinod; Lee, Hurng-Chun; Legré, Yannick; Lin, Simon C.; Maaß, Astrid; Medernach, Emmanuel; Merelli, Ivan; Milanesi, Luciano; Rastelli, Giulio; Reichstadt, Matthieu; Salzemann, Jean; Schwichtenberg, Horst; Wu, Ying-Ta; Zimmermann, Marc:
Virtual screening on large scale grids.
In: Parallel computing 33 (2007), 4/5, S. 289-301
http://dx.doi.org/10.1016/j.parco.2007.02.010
Jacq, Nicolas (Hrsg.); Müller, Henning (Hrsg.); Blanquer, Ignacio (Hrsg.); Legré, Yannick (Hrsg.); Breton, Vincent (Hrsg.); Hausser, Dominique (Hrsg.); Hernández, Vicente (Hrsg.); Solomonides, Tony (Hrsg.); Hofmann-Apitius, Martin (Hrsg.):
From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences - Proceedings of HealthGrid 2007.
Amsterdam [u.a.] : IOS Press, 2007
(Studies in health technology and informatics; 126)
Klie, Hector; Wheeler, Mary Fanett; Clees, Tanja; Stüben, Klaus:
Deflation AMG Solvers for Highly Ill-Conditioned Reservoir Simulation Problems.
In: Society of Petroleum Engineers <United States>:
SPE Reservoir Simulation Symposium 2007 : February 26 -28, 2007, Houston, Texas, USA.
SPE, 2007
Klinger, Roman; Rudolph, Günter:
Automatic Composition of Music with Methods of Computational Intelligence.
In: WSEAS transactions on information science and applications 4 (2007), 3, S. 508-515
Klinger, Roman; Tomanek, Katrin:
Classical probabilistic models and conditional random fields.
Dortmund : Technische Universität, 2007
(Algorithm engineering report)
Volltext
Klinger, Roman; Furlong, Laura I.; Friedrich, Christoph M.; Mevissen, Heinz-Theodor; Fluck, Juliane; Sanz, Ferran; Hofmann-Apitius, Martin:
Identifying Gene-Specific Variants in Biomedical Text.
In: Journal of bioinformatics and computational biology 5 (2007), 6, S. 1277-1296
Klinger, Roman; Friedrich, Christoph M.; Fluck, Juliane; Hofmann-Apitius, Martin:
Named Entity Recognition with Combinations of Conditional Random Fields.
In: Hirschmann, Lynette (Hrsg.) u.a.:
Proceedings of the Second BioCreative Challenge Evaluation Workshop : April 23-25 2007, Madrid, Spain.
Madrid, 2007, S. 89-91
Kolárik, Corinna; Hofmann-Apitius, Martin; Zimmermann, Marc; Fluck, Juliane:
Identification of new drug classification terms in textual resources.
In: Bioinformatics 23 (2007), 13, i264-i272
http://dx.doi.org/doi:10.1093/bioinformatics/btm196
Krämer-Fuhrmann, Ottmar:
RCE and SESIS - Service-Oriented Integration Environment for Collaborative Engineering.
In: ERCIM News (2007), 70, S. 30-31
Volltext
Kumpf, Kai; Mevissen, Theo; Wäldrich, Oliver; Ziegler, Wolfgang; Ginzel, Sebastian; Weuffel, Thomas; Ziegler, Wolfgang:
Multi-Cluster Text Mining on the Grid using the D-Grid UNICORE environment.
In: German e-Science Conference 2007 : GES 2007, 2. - 4. Mai 2007, Baden-Baden.
2007
Volltext
Kumpf, Kai; Mevissen, Theo; Wäldrich, Oliver; Ziegler, Wolfgang; Ginzel, Sebastian; Weuffel, Thomas; Wieder, Philipp; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Multi-Cluster Text Mining on the Grid using the D-Grid UNICORE environment.
CoreGrid, 2007
(CoreGrid technical report; TR-0109)
Volltext
Missier, Paolo; Wieder, Philipp; Ziegler, Wolfgang:
Semantic Support for Meta-scheduling in Grids.
In: Talia, Domenico (Hrsg.) u.a.:
Knowledge and Data Management in Grids.
New York, NY [u.a.] : Springer, 2007, S. 169-183
(CoreGrid series 3).
http://dx.doi.org/10.1007/978-0-387-37831-2%5F11
Pichot, Antoine; Wieder, Philipp; Ziegler, Wolfgang; Wäldrich, Oliver; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Dynamic SLA-negotiation based on WS-Agreement.
CoreGrid, 2007
(CoreGrid technical report; TR-0082)
Volltext
Raoult, Baudouin; Thole, Clemens-August; Gärtel-Zafiris, Ute:
Grid technology makes weather forecasts without boundaties a reality.
In: ERCIM News (2007), 70, S. 58-59
Volltext Externer Link
Rasheed, Hassan; Gruber, Ralf; Keller, Vincent; Wäldrich, Oliver; Ziegler, Wolfgang; Wieder, Philipp; Kuonen, Pierre; Sawley, Marie-Christine; Maffioletti, Sergio; Kunszt, Peter; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
IANOS: An Intelligent Application Oriented Scheduling Middleware for a HPC Grid.
CoreGrid, 2007
(CoreGrid technical report; TR-0110)
Volltext
Rümpler, Christian; Reichert, Frank; Berger, Frank; Stammberger, Hartwig; Terhoeven, Peter:
Simulation and verification of the arc behaviour in quenching chambers with splitter plates.
In: XVIIth Symposium on Physics of Switching Arc.
Brno : Letohrad, 2007, S. 181-184
(XVIIth Symposium on Physics of Switching Arc 1).
Rümpler, Christian; Zacharias, Albert:
Simulation of the switching arc for a motor protective circuit breaker.
In: Wolf, Klaus Dieter (Hrsg.); Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI <Sankt Augustin>:
8TH MpCCI User Forum 2007 : February 13 and 14, 2007, Sankt Augustin ; proceedings.
Sankt Augustin : Fraunhofer SCAI, 2007, S. 62-69
Rümpler, Christian; Reichert, Frank; Stammberger, Hartwig; Terhoeven, Peter; Berger, Frank:
Simulation und Verifikation des Lichtbogenlaufverhaltens in Löschkammerkonstruktionen.
In: Schöpf, Thomas (Hrsg.); Energietechnische Gesellschaft <Deutschland> / Fachbereich Kontaktverhalten und Schalten:
Kontaktverhalten und Schalten : 19. Fachtagung Albert-Keil-Kontaktseminar vom 26. bis 28. September 2007 an der Universität Karlsruhe.
Berlin, Offenbach : VDE-Verlag, 2007, S. 121-130
(VDE-Fachbericht 63).
Schwarz, Fritz:
Algorithmic Lie theory for solving ordinary differential equations.
Boca Raton, Fla. [u.a.] : Chapman & Hall/CRC, 2007
(Pure and applied mathematics; 291)
Schwarz, Fritz; Grigoriev, Dima:
Loewy and Primary Decomposition of 3D-Modules.
In: Advances in applied mathematics 38 (2007), 4, S. 526-541
Volltext
Seidel, Jan; Wäldrich, Oliver; Ziegler, Wolfgang; Wieder, Philipp; Yahyapour, Ramin; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Using SLA for resource management and scheduling - a survey.
CoreGrid, 2007
(CoreGrid technical report; TR-0096)
Volltext
Stüben, Klaus; Clees, Tanja; Klie, Hector; Lou, Bo; Wheeler, Mary Fanett:
Algebraic multigrid methods (AMG) for the efficient solution of fully implicit formulations in reservoir simulation.
In: Society of Petroleum Engineers <United States>:
SPE Reservoir Simulation Symposium 2007 : February 26 -28, 2007, Houston, Texas, USA.
SPE, 2007
Thole, Clemens-August; Nikitina, Lialia; Nikitin, Igor; Steffes-lai, Daniela; Roel, Kersten; Bruns, Jürgen:
Constrained optimization with DesParO.
In: 2007 Conference 'Virtual Product Development (VPD) in Automotive Engineering' : March 21st-22nd, 2007, Lake Chiemsee/Munich, Germany.
PayerConsulting, 2007
Thole, Clemens-August; Nikitin, Igor; Nikitina, Lialia; Riepl, Mareike:
DesParO: Interactive Environment for Multiobjective Parametric Optimization in Automotive Design.
In: Joint EUROPT-OMS Meeting 2007 : 2nd Conference on Optimization Methods & Software and 6th EUROPT Workshop on Advances in Continuous Optimization, July 4-7, 2007, in Prague, Czech Republic.
EurOpt, 2007
Thole, Clemens-August; Nikitina, Lialia; Nikitin, Igor:
Multiobjective Optimization with DesParO.
In: OPTIMUS Worldwide Users Meeting : June 25-26, 2007, Leuven, Belgium ; proceedings.
Noesis Solutions, 2007
Wäldrich, Oliver; Ziegler, Wolfgang; Papaspyrou, Alexander; Wieder, Philipp; Yahyapour, Ramin; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Novel Approaches for Scheduling in D-Grid - Towards an Interoperable Scheduling Framework.
CoreGrid, 2007
(CoreGrid technical report; TR-0122)
Volltext
Weidmann, Ernst-Peter; Bauer, Walter; Maihöfer, Martin; Scholl, Uwe:
A new CFD and thermal analysis method based on MpCCI.
In: Wolf, Klaus Dieter (Hrsg.); Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI <Sankt Augustin>:
8TH MpCCI User Forum 2007 : February 13 and 14, 2007, Sankt Augustin ; proceedings.
Sankt Augustin : Fraunhofer SCAI, 2007, S. 18-27
Wieder, Philipp; Wäldrich, Oliver; Ziegler, Wolfgang; CoreGrid - European Research Network on Foundations, Software Infrastructures and Applications for Large Scale Distributed, GRID and Peer-to-Peer Technologies; Institute on Resource Management and Scheduling:
Advanced Techniques for Scheduling, Reservation and Access Management for Remote Laboratories and Instruments.
CoreGrid, 2007
(CoreGrid technical report; TR-0078)
Volltext
Wolf, Armin; Zimmermann, M.; Hofmann-Apitius, Martin:
Alternative to consensus scoring : a new approach toward the qualitative combination of docking algorithms.
In: Journal of chemical information and modeling - Online 47 (2007), 3, S. 1036-1044
http://dx.doi.org/10.1021/ci6004965
Wolf, Klaus:
News around MpCCI Development and Projects.
In: Wolf, Klaus Dieter (Hrsg.); Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI <Sankt Augustin>:
8TH MpCCI User Forum 2007 : February 13 and 14, 2007, Sankt Augustin ; proceedings.
Sankt Augustin : Fraunhofer SCAI, 2007, S. 10-17
Wolf, Klaus Dieter (Hrsg.); Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI <Sankt Augustin>:
8TH MpCCI User Forum 2007 : February 13 and 14, 2007, Sankt Augustin ; proceedings.
Sankt Augustin : Fraunhofer SCAI, 2007
Volltext
Zimmermann, Marc; Maaß, Astrid; Schwichtenberg, Horst; Wolf, Antje; Jacq, Nicolas; Breton, Vincent; Hofmann-Apitius, Martin:
Design of New Plasmepsin Inhibitors : a Virtual High Throughput Screening Approach on the EGEE Grid.
In: Journal of chemical information and modeling 47 (2007), 5, S. 1818-1828
http://dx.doi.org/10.1021/ci600451t