Fachpublikationen 2002


Applications.
Weinheim : Wiley-VCH, 2002
(Methods and principles in medicinal chemistry; 14)

Basic technologies.
Weinheim : Wiley-VCH, 2002
(Bioinformatics; 1)

Aigner, Thomas; Bartnik, E.; Zien, Alexander; Zimmer, Ralf:
Functional genomics of osteoarthritis.
In: Pharmacogenomics 3 (2002), 5, S. 635-650
http://dx.doi.org/10.1517/14622416.3.5.635

Aigner, Thomas; Finger, F.; Gebhard, Pia Margarethe; Zien, Alexander; Zimmer, R.:
Genexpressionsprofilierung adulter humaner Chondrozyten mittels der cDNA-Array-Technologie.
In: Zeitschrift für Rheumatologie 61 (2002), 3, S. 260-262
http://dx.doi.org/10.1007/s00393-002-0406-6

Albrecht, M.; Hanisch, Daniel; Zimmer, Ralf; Lengauer, Thomas:
Improving fold recognition of protein threading by experimental distance constraints.
In: In silico biology 2 (2002), 3, S. 325-337

Beerenwinkel, Nico; Schmidt, Barbara; Walter, Hauke; Kaiser, Rolf; Lengauer, Thomas; Hoffmann, Daniel; Korn, Klaus; Selbig, Joachim:
Diversity and complexity of HIV-1 drug resistance : a bioinformatics approach to predicting phenotype from genotype.
In: Proceedings of the National Academy of Sciences of the United States of America 99 (2002), 12, S. 8271-8276
http://dx.doi.org/10.1073/pnas.112177799

Bendisch, Jürgen; Reimann, S.; Trotha, Hartmut von:
Site percolation for a class of constrained honeycomb lattices.
In: Physica / A, Statistical mechanics and its applications 307 (2002), 1-2, S. 1-14
http://dx.doi.org/10.1016/S0378-4371(01)00611-2

Benkner, Siegfried; Brandes, Thomas:
Efficient Parallel Programming on Scalable Shared Memory Systems with High Performance Fortran.
In: Concurrency and computation (2002), S. 789-803

Durchholz, Reiner:
A generic causal model for place latency.
In: Theoretical computer science / A u. B 289 (2002), 1, S. 1-49
http://dx.doi.org/10.1016/S0304-3975(01)00327-9

Eggeling, Eva; Ta´asan, Shlomo:
An optimization algorithm for the meteorological data assimilation problem.
In: Chan, T.F. (Hrsg.) u.a.:
Recent progress in computational and applied PDES : conference proceedings for the international conference held in Zhangjiajie in July 2001.
New York, NY [u.a.] : Kluwer Academic/Plenum Publishers, 2002, S. 171-181

Freudenberg, J.; Hanisch, Daniel; Zimmer, Ralf; Lengauer, Thomas:
A hypergraph-based method for unification of existing protein structure- and sequence-families.
In: In silico biology 2 (2002), 31, S. 339-349

Fuellenbach, Tanja; Stuebe, Klaus:
Algebraic multigrid for selected PDE systems.
In: Bemelmans, Josef (Hrsg.) u.a.:
Elliptic and parabolic problems : proceedings of the 4th European conference, Rolduc, Netherlands, 18-22 June 2001, Gaeta, Italy, 24-28 September 2001.
New Jersey, NJ [u.a.] : World Scientific, 2002

Füllenbach, Tanja:
Algebraic multigrid for selected systems of partial differential equations : Forschungsbericht, Graduiertenkolleg Scientific Computing 4/2001 - 3/2002.
Köln : Universität Köln, 2002

Hanisch, Daniel; Zien, Alexander; Zimmer, Ralf; Lengauer, Thomas:
Co-clustering of biological networks and gene expression data.
In: Bioinformatics (2002), S. 145-154

Hanisch, Daniel; Zimmer, Ralf; Lengauer, Thomas:
ProML - the Protein Markup Language for specification of protein sequences.
In: In silico biology 2 (2002), 3, S. 313-324

Hindle, S.A.; Rarey, Matthias; Buning, Christian; Lengauer, Thomas:
Flexible docking under pharmacophore type constraints.
In: Journal of computer-aided molecular design 16 (2002), 2, S. 129-149
http://dx.doi.org/10.1023/A:1016399411208

Hoffmann, Daniel; Schnaible, Volker; Wefing, Stephan; Albrecht, Mario; Hanisch, Daniel; Zimmer, Ralf:
A new method for the fast solution of protein-3D-Structures, combining experiments- and bioinformatics.
In: Hoffmann, Karl-Heinz (Hrsg.):
Coupling of biological and electronic systems : proceedings of the 2nd Caesarium, Bonn, November 1 - 3, 2000.
Berlin [u.a.] : Springer, 2002, S. 59-78

Hotzel, Eckehart:
Right projective semigroups with 0.
In: Journal of pure and applied algebra 170 (2002), 1, S. 35-66
http://dx.doi.org/10.1016/S0022-4049(01)00070-6

Jakumeit, Jürgen; Ravaioli, Umberto:
Influence of electron-electron scattering on the hot electron distribution in ultra-short Si-MOSFETs.
In: Physica / B, Condensed matter 314 (2002), 1-4, S. 363-366
http://dx.doi.org/10.1016/S0921-4526(01)01426-0

Klawonn, Axel; Widlund, O.B.; Dryja, M.:
Dual-Primal FETI Methods for Three-Dimensional Elliptic Problems with Heterogeneous Coefficients.
In: SIAM journal on numerical analysis 40 (2002), 1, S. 159-179
http://dx.doi.org/10.1137/S0036142901388081

Klawonn, Axel; Widlund, Olof B.; Dryja, Maksymilian:
Dual-Primal FETI Methods with Face Constraints.
In: Pavarino, Luca F. (Hrsg.) u.a.:
Recent developments in domain decomposition methods : Workshop on Domain Decomposition helt at ETH, Zürich on June 7-8th, 2001.
Berlin [u.a.] : Springer, 2002, S. 27-40
(Lecture notes in computational science and engineering 23).

Kleinschmidt, Martin; Tatchen, Jörg; Marian, Christel M.:
Spin-orbit coupling of DFT/MRCI wavefunctions : method, test calculations, and application to Thiophene.
In: Journal of computational chemistry 23 (2002), 8 : Special issue, S. 824-833
http://dx.doi.org/10.1002/jcc.10064

Lengauer, Thomas:
From Genomes to Drugs with Bioinformatics.
In: Basic technologies.
Weinheim : Wiley-VCH, 2002, S. 3-25
(Bioinformatics 1).

Lengauer, Thomas:
Future Trends.
In: Applications.
Weinheim : Wiley-VCH, 2002, S. 171-187
(Methods and principles in medicinal chemistry 14).

Lengauer, Thomas:
Glossary of algorithmic terms in bioinformatics.
In: Basic technologies.
Weinheim : Wiley-VCH, 2002, S. 405-424
(Bioinformatics 1).

ECCB 2002
Bioinformatics 18 (2002), Supplement 2
Oxford [u.a.] : Oxford University Press

Selected papers from RECOMB 2001
Journal of computational biology 9 (2002), 2
New York, NY : Liebert
ISSN 1066-5277

Li, Ziming; Schwarz, Fritz; Tsarev, Serguei P.:
Factoring Zero-dimensional Ideals of Linear Partial Differential Operators.
In: Mora, Teo (Hrsg.):
ISSAC 2002 : proceedings of the 2002 ACM-SIGSAM International Symposium on Symbolic and Algebraic Computation, July 07-10, 2002, Université de Lille, Lille, France.
New York, NY : ACM, 2002, S. 168-175
http://portal.acm.org/citation.cfm?doid=780506.780528

Linden, Johannes (Red.); Krapp, Michael (Red.); Ehling, Susanne (Red.); Maskell, Barbara (Red.):
Jahresbericht 2001 / Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI.
Sankt Augustin : Fraunhofer SCAI, 2002
(Jahresbericht / Fraunhofer-Institut Algorithmen und Wissenschaftliches Rechnen SCAI)
Volltext

Motherwell, W.D.S.; Ammon, Herman L.; Dunitz, Jack D.; Dzyabchenko, A.; Erk, P.; Gavezzotti, A.; Hofmann, D.W.M.; Leusen, F.J.J.; Lommerse, J.P.M.; Mooij, W.T.M.; Price, S.L.; Scheraga, H.; Schweizer, B.; Schmidt, M.U.; Eijck, B.P. van; Verwer, P.; Williams, D.E.:
Crystal structure prediction of small organic molecules: A second blind test.
In: Acta crystallographica / Section B, Structural science 58 (2002), 4, S. 647-661
http://dx.doi.org/10.1107/S0108768102005669

Oosterlee, Cornelis W.; Wienands, Roman:
A genetic search for optimal multigrid components within a Fourier analysis setting.
In: SIAM journal on scientific computing 24 (2002), 3, S. 924-944
http://dx.doi.org/10.1137/S1064827501397950

Post, Peter; Schilcher, K.:
Kl3 form factors at order p6 of chiral perturbation theory.
In: The European physical journal / C, Particles and fields 25 (2002), 3, S. 427-443
http://dx.doi.org/10.1007/s10052-002-0967-1

Rarey, Matthias:
Protein-Ligand Docking in Drug Design.
In: Basic technologies.
Weinheim : Wiley-VCH, 2002, S. 315-360
(Bioinformatics 1).

Reinhardt, S.; Gastreich, M.; Marian, Christel Maria:
Quantum Chemical Investigation of Initial Reactions between the Molecular Precursor TADB and Ammonia. I: Gas-Phase reactions.
In: The journal of physical chemistry / A, Molecules, spectroscopy, kinetics, environment & general theory 106 (2002), 16, S. 4205-4216

Schwarz, Fritz:
ALLTYPES: An Algebraic Language and Type System.
In: Cohen, A.M. (Hrsg.) u.a.:
Mathematical software : Proceedings of the first international congress of mathematical software, Beijing, China 17 - 19 August 2002.
Singapore : World Scientific, 2002, S. 486-500

Schwarz, Fritz:
Equivalence Classes, Symmetries and Solutions of Linear Third Order Differential Equations.
In: Computing 69 (2002), S. 140-162
http://dx.doi.org/10.1007/s00607-002-1454-0

Sommer, Ingolf; Zien, Alexander; Öhsen, Niklas von; Zimmer, Ralf; Lengauer, Thomas:
Confidence Measures for Protein Fold Recognition.
In: Bioinformatics 18 (2002), 6, S. 802-812
http://dx.doi.org/10.1093/bioinformatics/18.6.802

Sprengel, Frauke:
Comparing multilevel coarsening strategies.
In: Electronic transactions on numerical analysis 14 (2002), S. 178-194

Sthal, Martin; Rarey, Matthias; Klebe, Gerhard:
Screening of Drug Databases.
In: Applications.
Weinheim : Wiley-VCH, 2002, S. 137-170
(Methods and principles in medicinal chemistry 14).

Stüben, Klaus:
Scalable Solvers for Sparse Linear Systems.
In: ERCIM News (2002), 50
Volltext externer Link

Wickert, L.; Selbig, Joachim:
Structural analysis of the DNA-binding domain of alternatively spliced steroid receptors.
In: The journal of endocrinology 173 (2002), 3, S. 429-436
http://dx.doi.org/10.1677/joe.0.1730429

Zien, Alexander; Fluck, Juliane; Zimmer, Ralf; Lengauer, Thomas:
Microarrays: How Many Do You Need?
In: Myers, Gene (Hrsg.) u.a.; Association for Computing Machinery:
RECOMB 2002 : proceedings of the sixth annual International Conference on Computational Molecular Biology, April 18-21, 2002, Washington, DC, USA.
New York, NY : ACM Press, 2002, S. 321-330
http://doi.acm.org/10.1145/565196.565239

Zimmer, Ralf; Lengauer, Thomas:
Protein Structure Prediction.
In: Basic technologies.
Weinheim : Wiley-VCH, 2002, S. 237-313
(Bioinformatics 1).